A folder browser, not a storage engine
Filebrowser points at a directory and shows the plain files already there - nothing is chunked, deduplicated, or content-addressed. Cotton is the storage layer itself: a content-addressed chunked engine. Filebrowser shows your filesystem; Cotton is one.
Plaintext on disk
Filebrowser stores files as plaintext and closed its at-rest-encryption request as not planned; there is no client-side or end-to-end option in either the original or the Quantum fork. Cotton does streaming AES-GCM by default plus client-side E2E folders.
Auth and previews, classic versus purpose-built
The original Filebrowser is username and password with no 2FA or passkeys; the Quantum fork adds OIDC, LDAP, and 2FA - credit where due. Filebrowser previews images, text, video, and PDF; Cotton adds audio waveforms, STL/OBJ/3MF 3D, HEIC, mobile PDF text, and video seek on encrypted storage.
Point at a folder, or run an engine
Pick Filebrowser when you already have files in a directory and just want a clean window onto them with near-zero setup and no database - your backups and rsync read those plain files directly. Pick Cotton when you want an engine that encrypts, deduplicates, previews, and recovers.